rs27985916 SNP Detail

Summary

• ID
  rs27985916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72196046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCATTGG AACACTCTCT
  TCCTACAAAG GTCTCTTACA AAGCAAATAT ATAGTCACTT ACCATTCAAT AAGGGAAGCC
  GCTTATATTT TGCTTTCATG GCAAAGGTAA AGATTAGCTA GCACCCACCA AATTCCTCAA
  ACAGGAAAAG TAAAAGAAAG CAAACTAAGT TTTAAACCAA TGCTGCCAGT CGCTACCTGT
  R
  AGATGGTTGG ATGGGATAGT TAATTCTTGA GCTGTGATGA TGAACTTAGC TATGAATTCA
  TTCATCGGAC ATCATAAACT TGTCTTAACA TTCCATGTTC TTAAGATGCT TTCATGTAAT
  ATCACTGTCA CGTCTCTGCA GGACCATAGG ACACAGGGAG CACCTGTGAG TGCCCATAGC
  ACACAGGGAG CACCTGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38120249	NES09271460	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G
ss320342084	CHEV_2_72203759	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27985916					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120249	NES09271460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72196046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			147 bp proximal
Rr558962	regulatory region 558962			828 bp proximal
Tssr18337	transcription start site region 18337			686 bp downstream