rs27985923 SNP Detail

Summary

• ID
  rs27985923
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72195488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAATCAA GTTTTACAAA
  GTCAGAAAGT TTCAGGCCAG AGATTTTTTT TTTTTTTTTT TTTTTTTTTT GGTGATACTG
  TAATTAACAA ACTCACTCAC CATATTAAAT GGAAAACTTG TGGTTCTGTT GTCCTGAAAG
  TCTCTCCGTA GGTGTCTAAA ATGTGACTTA TGGTAGGATT GGGCCTGTTT TGAATGCATA
  M
  TAATGTACTA AAATAGCAAC CACAGGCCTG CATGCAAGGT AGCTCAGACT TTATTTTATA
  TGTAGTAGAA CTTGAATATC CCCCCTTGAA ACTTATTATT CTAAGTATAT AAAATCCCAA
  GCCAGGTTCC TGATTCTTCC TCCTACCCAG AAATTCCTGC AAAGGTGAAG CCATTCAGAT
  CCTATTAATT TTTCTCCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38120256	NES09271453	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985923					SNP	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38120256	NES09271453	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72195488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			705 bp proximal
Rr558962	regulatory region 558962			1386 bp proximal
Tssr18337	transcription start site region 18337			128 bp downstream