rs27986625 SNP Detail

Summary

• ID
  rs27986625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70887531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGAGTCCA GAAAATGGGT TGTGAAATAA TTAGATGCTG CTTAGGAGAC AGGCATTTTG
  TTTTAGAAGT ACTTTTTTTT TTTTCCCAAG AGAAAAAAAA TGTTCAAACA AAAGTATAGT
  ATTTGTAGAT AAATAGTATT TAACAGCCAG CCTCCATCCA TTCAAGGTCA GACTGAAGAG
  AACGACACAG TGAATTGATG CTTCCATGCC CGTCACCTGG ATTAAGGGAT TATGGAATTG
  CCGCTCTTTA TCTTTCACTT TGCATCTGTA AGAATTATGG GCATTTTTCT GTGTGCCAAG
  Y
  TTCAGTGGTG TTGTTCCTCC GGAGCAAATC ACCTTGTTGA GATAGGTTCT CCTTTCACTG
  GACTGGGAAG CTAGAATACC TGTAGACAGC CTGGTCAGCA AGTGCTATGA ATTTGCCTGT
  CTCCACCTCC ACAACTCTAG GAAAACCATG AGTATTGGGG ATCTAAATTC CGGTCCTCAT
  GCTTGCAGGG CACCAGCTGG AACTATCTCA GAAGTGATTA ATAACGCCTA AGTTCTTTTC
  TTGTGGGATC AGAAACTGGA AGTCAGAGAG ACTAGTGATT TTTGAGGTTT GCCTTGACTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38125055	NES09278516	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	T		C	C	T	C	T	T	T	T	T
ss45251964	mCV24281280	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss146738312	ENSMUSSNP6810978	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27986625					SNP	C	T	T	C	C	T	C	C	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125055	NES09278516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70887531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			850 bp distal
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				Noncoding-Transcript-Variant
Mettl8	methyltransferase 8, methylcytidine			1604 bp upstream
Rr397032	regulatory region 397032			1373 bp downstream
Rr558662	regulatory region 558662			1626 bp distal
Rr558663	regulatory region 558663			1325 bp distal
Rr558664	regulatory region 558664			1429 bp distal
Rr558665	regulatory region 558665			902 bp distal
Tssr18237	transcription start site region 18237			1371 bp downstream
Tssr24467	transcription start site region 24467			1674 bp upstream
Tssr24468	transcription start site region 24468			1658 bp upstream
Tssr24469	transcription start site region 24469			1576 bp upstream