rs27986638 SNP Detail

Summary

• ID
  rs27986638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70886210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT CCGTGTGTCG CTACCTCTTG
  R
  TCTCTGCCCC GAGTCCCCAG CGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38125069	NES09278502	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G	G	A	G	G		G	G	G	G		A
ss45208914	mCV24280983	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss146738295	ENSMUSSNP982974	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320335133	CHEV_2_70893923	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27986638					SNP	A	A	G	G	A	A	G	G	A	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125069	NES09278502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70886210 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			within coordinates
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Mettl8	methyltransferase 8, methylcytidine			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			52 bp downstream
Rr558662	regulatory region 558662			305 bp distal
Rr558663	regulatory region 558663			4 bp distal
Rr558664	regulatory region 558664			108 bp distal
Rr558665	regulatory region 558665			398 bp proximal
Tssr18237	transcription start site region 18237			50 bp downstream
Tssr24467	transcription start site region 24467			353 bp upstream
Tssr24468	transcription start site region 24468			337 bp upstream
Tssr24469	transcription start site region 24469			255 bp upstream