rs27986640 SNP Detail

Summary

• ID
  rs27986640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70886148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATTAGGG CCAGGAGAGG
  CGGGCTAGGG GCAGGGAGGG GTGGGGCGGG GCCAGGCCAG CCCTCGCTCT GCCTGACGGG
  AATTGTAGTT CTGAAAAAGA AGCCATAGGG GCGGAAAAGG CCAAGGGGAC TACATTTCCG
  GGAGAGGGAG TGGATACGGA GGGCCGCGAG GTGCAGCGTT AATCCCGAGA GCAGAAAGAA
  R
  GGCCAGGAAG GCGCCGTTGA TTCTGTTCCT TTGCGTCAAA TCCGTGTGTC GCTACCTCTT
  GATCTCTGCC CCGAGTCCCC AGCGCGGGGT CCCGCGTCAG CCTTCCTTTG AGGTTCGCAG
  GTGGCGGCTG CCACCCCTCG CGGAAGTGAG GGGCGCGCCC CTCCTGGGCC CTGCGGACCC
  CTAGTCTCCA TGGGCCGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38125071	NES09278500	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27986640					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125071	NES09278500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70886148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			within coordinates
Dcaf17	DDB1 and CUL4 associated factor 17			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Mettl8	methyltransferase 8, methylcytidine			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			within coordinates
Rr558662	regulatory region 558662			243 bp distal
Rr558663	regulatory region 558663			within coordinates
Rr558664	regulatory region 558664			46 bp distal
Rr558665	regulatory region 558665			460 bp proximal
Tssr18237	transcription start site region 18237			within coordinates
Tssr24467	transcription start site region 24467			291 bp upstream
Tssr24468	transcription start site region 24468			275 bp upstream
Tssr24469	transcription start site region 24469			193 bp upstream