rs27986645 SNP Detail

Summary

• ID
  rs27986645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAGGAAGA AAACACAGCA ATTACCACAA AACCAGTCAG
  GGTCCCCGCT GGCCACACAA GGACGAGCCT TTGGGAAGGA GAAATTCAAT CCTACTTTGA
  Y
  GGGAAAAACA GCAACTTTCA CCACTAATTA CCATACAAAA GCATAGTGGT TACACAACTA
  AATGTTGAAG TCAACCTCAT CCACAACGTC CCAAGTGCGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38125076	NES09278491	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27986645					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125076	NES09278491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885590 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			101 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			82 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			267 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			316 bp proximal
Rr558664	regulatory region 558664			491 bp proximal
Rr558665	regulatory region 558665			1018 bp proximal
Tssr18237	transcription start site region 18237			485 bp upstream
Tssr24467	transcription start site region 24467			258 bp downstream
Tssr24468	transcription start site region 24468			270 bp downstream
Tssr24469	transcription start site region 24469			288 bp downstream