rs27987156 SNP Detail

Summary

• ID
  rs27987156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73189105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTACAG CAGGAGTTTG
  ATGTGGAAGA AGCTCGAGAG GAAGGTTGGC TTGGCCATTT CACATCAGCT AGACTGGACC
  CAGAATGATG GGAGGTGGGG GAAAGGGTCC AGTTAGAAAG GAATTATAAG AATCTAGCAG
  ACACTGGAAA TAGAGGCCGG GGTAGACACC GGACCCCACG GAGGAAGAAC TACTTGCTCT
  R
  AATGACTCTT TCACTTGAGG AGGAAATCAG TGAGGTTTGT TAGAAATCCT GAGAAACTGA
  GACAGGAACA GTATGTCTGA AAATTAAAAA ATGCTGCCTC TATATTCAAA AGGAGATTCC
  AGCAATATAC TTAAAAGCCA AGGAAATCTG GAACCAGACC CACATAAGTG GGTTTGCATG
  AGCGGTTATA TTTCCAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38117286	NES09270123	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27987156					SNP	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117286	NES09270123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73189105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11773	CpG island 11773			1544 bp distal
Gm13703	predicted gene 13703			within coordinates
Gpr155	G protein-coupled receptor 155			Intron
				Noncoding-Transcript-Variant
Rr373357	regulatory region 373357			within coordinates
Rr559132	regulatory region 559132			1362 bp distal
Rr559133	regulatory region 559133			652 bp proximal
Rr559134	regulatory region 559134			753 bp proximal
Rr559135	regulatory region 559135			1869 bp proximal