rs27987157 SNP Detail

Summary

• ID
  rs27987157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73189066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTATCA GGTACTGGAG
  GGACTTGAGG GTCTCAACCT GAACTACAGC AGGAGTTTGA TGTGGAAGAA GCTCGAGAGG
  AAGGTTGGCT TGGCCATTTC ACATCAGCTA GACTGGACCC AGAATGATGG GAGGTGGGGG
  AAAGGGTCCA GTTAGAAAGG AATTATAAGA ATCTAGCAGA CACTGGAAAT AGAGGCCGGG
  R
  TAGACACCGG ACCCCACGGA GGAAGAACTA CTTGCTCTAA ATGACTCTTT CACTTGAGGA
  GGAAATCAGT GAGGTTTGTT AGAAATCCTG AGAAACTGAG ACAGGAACAG TATGTCTGAA
  AATTAAAAAA TGCTGCCTCT ATATTCAAAA GGAGATTCCA GCAATATACT TAAAAGCCAA
  GGAAATCTGG AACCAGACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38117287	NES09270122	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27987157					SNP	G	G	G	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117287	NES09270122	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73189066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11773	CpG island 11773			1505 bp distal
Gm13703	predicted gene 13703			within coordinates
Gpr155	G protein-coupled receptor 155			Intron
				Noncoding-Transcript-Variant
Rr373357	regulatory region 373357			within coordinates
Rr559132	regulatory region 559132			1323 bp distal
Rr559133	regulatory region 559133			691 bp proximal
Rr559134	regulatory region 559134			792 bp proximal
Rr559135	regulatory region 559135			1908 bp proximal