rs27987158 SNP Detail

Summary

• ID
  rs27987158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73188922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCACAGA TTGTCAGTGA
  GCCTGGGTTT AAGGGCTATG CAGTAAAAGC AGGAAGGAGA GAGAGGACAC AAGGGCCAGT
  CTGGGGAAAA GCACGAAGAA GTTGGTAGTG TTCACAGGGA GAGAAGGAAG AACCGGATTG
  AGCAGGAATT ATCAGGTACT GGAGGGACTT GAGGGTCTCA ACCTGAACTA CAGCAGGAGT
  Y
  TGATGTGGAA GAAGCTCGAG AGGAAGGTTG GCTTGGCCAT TTCACATCAG CTAGACTGGA
  CCCAGAATGA TGGGAGGTGG GGGAAAGGGT CCAGTTAGAA AGGAATTATA AGAATCTAGC
  AGACACTGGA AATAGAGGCC GGGGTAGACA CCGGACCCCA CGGAGGAAGA ACTACTTGCT
  CTAAATGACT CTTTCACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38117288	NES09270121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27987158					SNP	T	T	T	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117288	NES09270121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73188922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11773	CpG island 11773			1361 bp distal
Gm13703	predicted gene 13703			within coordinates
Gpr155	G protein-coupled receptor 155			Intron
				Noncoding-Transcript-Variant
Rr373357	regulatory region 373357			within coordinates
Rr559132	regulatory region 559132			1179 bp distal
Rr559133	regulatory region 559133			835 bp proximal
Rr559134	regulatory region 559134			936 bp proximal