rs27987159 SNP Detail

Summary

• ID
  rs27987159
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73188288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCTCAA GGTTAGAAAG
  AGAACCACAG AATAACAGAA GAGAAAATAA ACTATCTAGC CTAGCTCTCC AGAAACATGA
  AGGTTTAAAT AGTAAAATTA CATAAAAAAG ATGTAAAAAT TAAGAAAACA CATGAGGCTA
  TTACAATGGC TTATCTATAG AAAATGAGCA CACACACACA CACACAAATA AGCAATATGG
  S
  CTCTGTAAAA AAAAAAAAAA AAAGAAAAGA AACTGTTTTA CAGTTTTTCA GTGTGATGGT
  TTATAGATGC TCAGCCCAGA GAGTGGCACT ATTAGGAAGT GTGGCCCTGT TGGAGTAGGT
  GTGTCACTGT GGGTGTGGGC TCTAAGACCC TCATCATAGC TGCCTAGAAG TCAGTATTCT
  GCTAGCAGCC TTCAGATGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss38117289	NES09270162	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G	G		C	G
ss146759688	ENSMUSSNP4308027	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs27987159					SNP	C	C	C	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117289	NES09270162	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73188288 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11773	CpG island 11773			727 bp distal
Gm13703	predicted gene 13703			within coordinates
Gpr155	G protein-coupled receptor 155			Intron
				Noncoding-Transcript-Variant
Rr373357	regulatory region 373357			380 bp upstream
Rr559132	regulatory region 559132			545 bp distal
Rr559133	regulatory region 559133			1469 bp proximal
Rr559134	regulatory region 559134			1570 bp proximal