rs27989061 SNP Detail

Summary

• ID
  rs27989061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69422712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGTTCA AGGATCCCCC
  AGCCTTGCTT AAAGAAGGCA GGAGGCATTG GGAACTGTCA AAAGAGCCAC GGGGATGCCG
  ATTGCCCAGA AATGAGAAAG TTCTTTCCCT TCAATCCACT TGTTTTGAGA GTTTGACCTG
  CCTGAAGAGC ATTGCACACA GCCCTCCCCT CGAATGGAGT ACCTCTCAAG GGAAGAGCTT
  R
  TTAAGCTTGG TCCCTCTTTC ACCTGGGAAG AAGCCATTCC CATCCAGAGA ATCGAGCTTG
  CTGCAGTCTT TTTCCAGCAT CTCTAGAGAG CTGTGATAGC ATCCACGGGC CTCAGCACAA
  AGAAATGCAG AACAGCAGTG GCCAGGCCCA GTCAAAAAAA TGCATTTCAA AATGGAGATG
  ACAAATCTGC TCTCACACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss38130090	NES09287629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs27989061					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130090	NES09287629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69422712 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	1502 bp distal
Rr558432	regulatory region 558432	within coordinates