rs27989062 SNP Detail

Summary

• ID
  rs27989062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69422589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTGATC TCTGTTGACA
  AGGACAAGGA AGAACCACGC ACCCATGTGG CTTCTGAGAT GGCTTGGAGC TGGGATCCAC
  TGCCAAATAA GGAAAAAGGA TTTCTGTGTC AACAGGAGTT GGCAAAATGT TCAAGGATCC
  CCCAGCCTTG CTTAAAGAAG GCAGGAGGCA TTGGGAACTG TCAAAAGAGC CACGGGGATG
  Y
  CGATTGCCCA GAAATGAGAA AGTTCTTTCC CTTCAATCCA CTTGTTTTGA GAGTTTGACC
  TGCCTGAAGA GCATTGCACA CAGCCCTCCC CTCGAATGGA GTACCTCTCA AGGGAAGAGC
  TTGTTAAGCT TGGTCCCTCT TTCACCTGGG AAGAAGCCAT TCCCATCCAG AGAATCGAGC
  TTGCTGCAGT CTTTTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss38130091	NES09287628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27989062					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130091	NES09287628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69422589 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	1379 bp distal
Rr558432	regulatory region 558432	within coordinates