rs27989066 SNP Detail

Summary

• ID
  rs27989066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69422035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCTACTAT CTATCTTTTT GTGCTGTTTT ATTTATTTAT
  TTTTAACAGT GCTGGCTTTG AACCTAGGAC TTCTTCCTTA TCAGGCACAC ACTGTTGCTG
  W
  GGCATTCCAG CCCTCATTCA TCTTCTAATA ACAGGAAAAA GAACTGGCCA AAGGACTGGA
  ATCCTGTAGC CCTAAGTCAA GCCAGTCATG GAACAGCATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38130095	NES09287624	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27989066					SNP	A	T	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130095	NES09287624	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69422035 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	825 bp distal
Rr558432	regulatory region 558432	382 bp proximal