rs27989067 SNP Detail

Summary

• ID
  rs27989067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACCTGG GTCCCTTTTC
  TGAATACCTG ACCTGCACAT GATGCACAAT ACATTCAAGC AAAATACACA CACACACACA
  AATATGCACA AGCAAAATTA TAGCAAAAGA AAAATATCAA AACCATAGAC TGCATTCTGC
  TACTATCTAT CTTTTTGTGC TGTTTTATTT ATTTATTTTT AACAGTGCTG GCTTTGAACC
  Y
  AGGACTTCTT CCTTATCAGG CACACACTGT TGCTGAGGCA TTCCAGCCCT CATTCATCTT
  CTAATAACAG GAAAAAGAAC TGGCCAAAGG ACTGGAATCC TGTAGCCCTA AGTCAAGCCA
  GTCATGGAAC AGCATATCTG ACACCCAGCA TATGCTGTGG GTAATGTAAG GTTGTTGTGA
  ATGGATCAGC TTGGGCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38130096	NES09287623	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27989067					SNP	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130096	NES09287623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421999 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	789 bp distal
Rr558432	regulatory region 558432	418 bp proximal