rs27989068 SNP Detail

Summary

• ID
  rs27989068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69421132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTGGAG AATGGATGAA
  TGAAATTCAA CAGGAAATAC ACTTCATTTG GCTCCTGGCA TTTCACCCCA GTTGGTCTAA
  ATGCTGGCCT GAACTTACAG GCTACCCCAC ATGCTGAGAG GATCTTGCCA TCTTAAGTGC
  CAGGAGAAGT ACCATCCAAG GGTTTCAGAG TGTTTGCTTC TCTGTAGCAA CCAACGCTTG
  Y
  CTTTAGGGCA CACTTCATAT CATAAGTTTT CTGTGTGCAC TGAAGCTCAG TTTTTCTCCA
  CTGTCCCTGG GGACAATTGG CAGAGGTGCT TTTGGCTGTC ACAGTTAGGG GATTCCACAG
  TCCCTAGTGG GTGGAGGCCA AGAGCACTGA CAAACATTTT ACAATAGACA GGACAGTGTC
  ACACAAAAAA TAATTATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38130098	NES09287669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27989068					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130098	NES09287669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69421132 () rs orientation: forward

Symbol	Name	Function Class
Rr373310	regulatory region 373310	within coordinates
Rr558431	regulatory region 558431	within coordinates
Rr558432	regulatory region 558432	1285 bp proximal