rs27989072 SNP Detail

Summary

• ID
  rs27989072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69420462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC TAGCAAGCAC CTGAACAGGA
  R
  GATTTCCCAA TGCAGTGGGA AGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38130102	NES09287665	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	G		A
ss320331743	CHEV_2_69428175	CHEVERUD	SCREENING_POP	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27989072					SNP	A	A	A	A	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130102	NES09287665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69420462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11711	CpG island 11711	1898 bp distal
Rr373310	regulatory region 373310	644 bp upstream
Rr558430	regulatory region 558430	1734 bp distal
Rr558431	regulatory region 558431	517 bp proximal
Rr558432	regulatory region 558432	1955 bp proximal