rs27989076 SNP Detail

Summary

• ID
  rs27989076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69419370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TTTAAACTCC ACAGGACACA
  R
  CCTGAACTGT AAACTCCAGG ACTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38130106	NES09287712	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	A	A		G	G	G		A
ss146729503	ENSMUSSNP6397631	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss320331733	CHEV_2_69427083	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27989076					SNP	A	G	G	G	A	A	A	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130106	NES09287712	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69419370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11711	CpG island 11711	806 bp distal
Rr373310	regulatory region 373310	1736 bp upstream
Rr558429	regulatory region 558429	1926 bp distal
Rr558430	regulatory region 558430	642 bp distal
Rr558431	regulatory region 558431	1609 bp proximal