rs27990472 SNP Detail

Summary

• ID
  rs27990472
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78436394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGAAGC CTAACTGTTA
  ACATGCAGTG TGTGAACCCT GGTGTCTTGA AGTGGGTGGA GGGTGACAGG AAATGATCCT
  TCTCTGGCAG AAAGCTCTCT TCATCGGGTG TCACAAGGCA AAGGTTTCCT ATATATAGCT
  CTTCTCTTCT GTCCCCTCAT CTCCTCAACC ACAGAATAGC TCTCCAGTGT CAAGGTTCTC
  W
  CCCACTTAGG ATCTTGTGAA TACATTCTGC CTATAATGAA ATTCTGACCG AAAGTCTCAT
  AGAGCCAAGT GATTCAGGGC TGTGGAACCC AGACTCTTCT AAAGTTAAAT GTTCTTCTCA
  AGAAACTGAA TTTTGAAATT AATGCCTAAT AACTGTTACA TACTAGTTTA TATGTCTTGT
  AGGACTATAC CCTCATGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38096297	NES09264789	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27990472					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38096297	NES09264789	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78436394 () rs orientation: forward

Symbol	Name	Function Class
Rr559876	regulatory region 559876	225 bp proximal