rs27990482 SNP Detail

Summary

• ID
  rs27990482
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78435234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCAGGA ACATTTGAGA
  AGCTACACTG CTAGTCTTAA CACTGATGCC CCATTTCACA TGGGAGAACC GTGGAGCGCA
  CAGAGGCTAT TTGCCTAAGG TCCCTTCTAC CAGAAAGGTA GGTTCCAGAA ACTATCCCCC
  TGTCTCATCC CTGTGACTCC TCTGGTAAGC TCTAGGCTTT TATTCATATT TGATGCCCCA
  W
  GAAAGAGGTT CCTTTGTAGG AGATGAGCTA CTCGACTGGT GCTCAGTTAC CACAGATGTG
  CTTTATCAGT GCAAGCCTTC TACATTTCAC ACAGTAACAC TCATGACCAA ACCATGAGGG
  TTCCTCAAAT GTGAAGATGG ATTCACAATC AGTCTGCTAA GCCTTAGAAT ACAGAATAAA
  TATTAATCAA TATAGAATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38096307	NES09264779	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27990482					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38096307	NES09264779	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78435234 () rs orientation: forward

Symbol	Name	Function Class
Rr559876	regulatory region 559876	1385 bp proximal