rs27991869 SNP Detail

Summary

• ID
  rs27991869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69716778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGTCGTA TTTTATTTGA GCCCAGGGCT TTGTGCATGC
  CTGGCAAGCG ACTACTGAAC TGCATTCCTA ATACCATTGC CACCATCACC ATCATCAAGA
  Y
  ATAAAGAGAC AAGAGCATGT CTAATAATAA AATGTAGAGA ATAGAAAGTG TTTAAAACAC
  AGGAGTGGAG GTGATGGTGA CTTAACACTT ATAAGATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38129192	NES09278002	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	C	C	T	T		T	C	T
ss45374932	mCV25429404	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C
ss146730638	ENSMUSSNP1646782	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss320332414	CHEV_2_69724491	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27991869					SNP	T	T	T	T	C	C	C	C	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129192	NES09278002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69716778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	445 bp distal
Mettl5	methyltransferase 5, N6-adenosine	819 bp upstream
Mettl5os	methyltransferase 5, opposite strand	within coordinates
Rr397023	regulatory region 397023	1249 bp downstream
Tssr24451	transcription start site region 24451	804 bp upstream