rs27991870 SNP Detail

Summary

• ID
  rs27991870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69716645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AGACTTAAGG TGACCAATGC
  Y
  TAGTAAGCTC GAATGACTTT ATTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38129193	NES09278001	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C		C	T	T		C	T	C	C		C
ss45358059	mCV25429403	ABI	CRAMUS_MOUSE	f	SNP	C	T	T					C	C
ss146730636	ENSMUSSNP6293355	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						C
ss320332413	CHEV_2_69724358	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27991870					SNP	C	T	T	T	C	C	C	C	C	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129193	NES09278001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69716645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	312 bp distal
Mettl5	methyltransferase 5, N6-adenosine	686 bp upstream
Mettl5os	methyltransferase 5, opposite strand	within coordinates
Rr44277	regulatory region 44277	556 bp proximal
Rr56967	regulatory region 56967	within coordinates
Rr397023	regulatory region 397023	1116 bp downstream
Tssr24451	transcription start site region 24451	671 bp upstream