rs27991871 SNP Detail

Summary

• ID
  rs27991871
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69716266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAAGCG GTCTTCATCG
  GCGATCACAA ACCAGCCTCC ACCAAGCCCG GGAACGCCAG CTTTGTCTTG AGTATCTATA
  GACCTGCAAG GGATGGGGAG AGAGTTGAAG GCAATATGGG ACACCAGGCC CGTGTCCACC
  CACGCCTCAG AAAGTAGCGG TCTACACCCA CCTCTGCGTC CTTCTCCAGT CGAATGCTCG
  K
  CTTTAATCTT CCCGTCCTCG TTTTCTGAGG CTTCGAGTTT CTTAGCACTT ACGGATGTCA
  GTGAAGCAAG AAGAAACGTC AAAAGAGATT TGAAAAGAAA GAATATTGCC GGCATGGGTA
  GTGTACATTT TAGTTCCTCA TTCAGGAGGA TCTCTGTGAG TTTGAGGATG GCCTGGTTTA
  CAAAGTGAGT TCCAGACCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129194	NES09278046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129194	NES09278046	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69716266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	within coordinates
Mettl5	methyltransferase 5, N6-adenosine	307 bp upstream
Mettl5os	methyltransferase 5, opposite strand	within coordinates
Rr44276	regulatory region 44276	1666 bp distal
Rr44277	regulatory region 44277	935 bp proximal
Rr56967	regulatory region 56967	within coordinates
Rr397023	regulatory region 397023	737 bp downstream
Tssr24451	transcription start site region 24451	292 bp upstream