rs27991875 SNP Detail

Summary

• ID
  rs27991875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69714573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATTCCC AGAAACCACA
  TGGTGGCTCA CAACCATCCA TAACGAGATC TGGCGCCCTC TTCTGGAGTG TCTGAAGACA
  GCTACAGCAT ACTTACATAC AATAAATAAA TAAATCTTTA AAAGAAAATT AGGTTTCATT
  ACAAACCTTA CAACCAGAAG CTGTAAAAAG TCACAATGAG AAAACCAGGG ACTTGTGTGG
  Y
  AGTAGCTGGC TCAGTGTGTA CTGTACTTAC CCAGAAAGCA TTAGAACCTG AGCTCATATA
  CCCAGCAGCC ATGTAAAAGG TCAGGTGTTC ATGATTATAA ACCCAGTGCT AGGAACACAG
  GACAGAAGGA TCTCTGAGGC TTGCTGGTCA GCCAGTTTAG GTGAATGGGT AAGCTCTAAA
  TACAGTAAGA CCCTGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129198	NES09278060	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991875					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129198	NES09278060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69714573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	1004 bp proximal
Mettl5	methyltransferase 5, N6-adenosine	within coordinates
Mettl5os	methyltransferase 5, opposite strand	1453 bp upstream
Rr44276	regulatory region 44276	within coordinates
Rr50128	regulatory region 50128	973 bp distal
Rr56967	regulatory region 56967	27 bp proximal
Rr397023	regulatory region 397023	656 bp upstream
Tssr24451	transcription start site region 24451	1328 bp downstream