rs27991909 SNP Detail

Summary

• ID
  rs27991909
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69693675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA TTGAGGTATG ATTCTTGTGT
  K
  GTTAAATTGT AACTTAAGAT GAAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38129234	NES09278881	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	G		T	G	T		T
ss146730545	ENSMUSSNP2751378	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320332359	CHEV_2_69701388	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27991909					SNP	T	G	G	T	G	G	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129234	NES09278881	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69693675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11719	CpG island 11719			1186 bp distal
Rr397022	regulatory region 397022			1668 bp downstream
Rr558483	regulatory region 558483			1759 bp distal
Rr558484	regulatory region 558484			621 bp distal
Ssb	small RNA binding exonuclease protection factor La			Intron
				Noncoding-Transcript-Variant
Tssr18173	transcription start site region 18173			1747 bp downstream
Tssr18174	transcription start site region 18174			1696 bp downstream
Tssr18175	transcription start site region 18175			1678 bp downstream
Tssr18176	transcription start site region 18176			1153 bp downstream