rs27991910 SNP Detail

Summary

• ID
  rs27991910
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69692987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAACAGT AACTCATAAC
  TATATTCAGC TGCTGCAGAT AAACTCTTCA AGAGCTGGTA TACTTCCGTA CAATATGGTA
  GGGTGGTTTA GTAAGGCGCT GAAAGCCAGT AAGACAGAAG ATCCGGTTTG TGATTTCTAG
  CAAACCAGTA TCACAGTCCC TCTTTATTCT AGGATTGTTG TCAGACCGTG AAACAGGAAA
  S
  TGGCTATAGA GTTAACCAGT GTAGTAGTGT TTTAGGCACA TCCTTACCTT CCAGCGTCCC
  TAGTTTAAAA TTTTTTGTAT CTGTGCTCAC AAGGTCCCAT TTTTCTTGTA TTCTCCTATA
  TAGTGTCTAA CACCGTAACT TTCATATCTG AACTCTATTT TCATTTTTAC CAGTAATAAG
  TTTTGGTAAG TCAGCTGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38129235	NES09278879	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27991910					SNP	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129235	NES09278879	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69692987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11719	CpG island 11719			498 bp distal
Rr397021	regulatory region 397021			1986 bp downstream
Rr397022	regulatory region 397022			980 bp downstream
Rr558483	regulatory region 558483			1071 bp distal
Rr558484	regulatory region 558484			within coordinates
Ssb	small RNA binding exonuclease protection factor La			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr18173	transcription start site region 18173			1059 bp downstream
Tssr18174	transcription start site region 18174			1008 bp downstream
Tssr18175	transcription start site region 18175			990 bp downstream
Tssr18176	transcription start site region 18176			465 bp downstream