rs27997669 SNP Detail

Summary

• ID
  rs27997669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76577011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACAACT TCTCGACTTC
  TAGATTTGTC TTATTGATTC CAGTTGGTGG CGTACACATT GTCCATTCAC CAACACTCAC
  ATCACATTTT TCTACGATGT ATCCTTGGAT TTCACAGCCA CCATCATAGA TAGGTTTGGT
  CCAAGAAAGG AAAACCGAAG ATCTGGTAAC ATCCATGACT TTGGGGTTGT TTGGAGGGCC
  Y
  GGCTTATAAA TGGGGTCACA TGCCTTCTGG TAAGCAGAAG GGGGGCTTGG TTCACTAAGT
  CCAGCAGCAT TTTCAGCGGA GACTCTGAAT TCATAATTGT GATTTTCTAA CAGTCCAGTC
  ACTCTCAGGC GCAGCTCTCC AATTAGACGC TTGTGGCATC TTGTCCATCT TATGCCTTCT
  TTGTCCCGTT TTTCTAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38104295	NES09268168	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27997669					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104295	NES09268168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76577011 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr542	transcription start site region 542	477 bp downstream
Tssr24719	transcription start site region 24719	1533 bp upstream
Tssr24720	transcription start site region 24720	1069 bp upstream
Tssr24721	transcription start site region 24721	1027 bp upstream
Tssr24722	transcription start site region 24722	565 bp upstream
Tssr24723	transcription start site region 24723	248 bp upstream
Tssr24724	transcription start site region 24724	396 bp downstream
Ttn	titin	within coordinates