rs27997670 SNP Detail

Summary

• ID
  rs27997670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76576879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTTCAA GGTCAAGGTC
  TATATCAGGT GCTTCAAGTT TTTCTTCAAC CATTACAGGC CCAGGGACAT CAGCATGCTC
  CCCTACTCCG GCCTTATTAA TGGCACAGAT CCGGAAGTTG TATTCATGCT TTTCCAACAA
  CTTCTCGACT TCTAGATTTG TCTTATTGAT TCCAGTTGGT GGCGTACACA TTGTCCATTC
  R
  CCAACACTCA CATCACATTT TTCTACGATG TATCCTTGGA TTTCACAGCC ACCATCATAG
  ATAGGTTTGG TCCAAGAAAG GAAAACCGAA GATCTGGTAA CATCCATGAC TTTGGGGTTG
  TTTGGAGGGC CTGGCTTATA AATGGGGTCA CATGCCTTCT GGTAAGCAGA AGGGGGGCTT
  GGTTCACTAA GTCCAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38104296	NES09268166	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27997670					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38104296	NES09268166	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76576879 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr542	transcription start site region 542	609 bp downstream
Tssr24719	transcription start site region 24719	1401 bp upstream
Tssr24720	transcription start site region 24720	937 bp upstream
Tssr24721	transcription start site region 24721	895 bp upstream
Tssr24722	transcription start site region 24722	433 bp upstream
Tssr24723	transcription start site region 24723	116 bp upstream
Tssr24724	transcription start site region 24724	528 bp downstream
Ttn	titin	Coding-Synonymous