rs28000371 SNP Detail

Summary

• ID
  rs28000371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74068623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAAGAT GCCAAGAATT
  TCACATATGT ATGAAAATAT AAAATTATGG GGTTTTTTAT TACTTAATGG AGATTGAACC
  TCCCCAAAAA GTTTTCTTTA TTATCTCTCC TATTCTAGAA AATGGAGCTG GCTATCCTAA
  TGCTAAGTTG GTCTCTTATA GTCTATGGAA TTAAGAAAAA AAAAAAAGAG CAGACTTAAG
  R
  TTTTTCTTAT TTTCTCTATG GCACAGTTGG CTTCTTCATA ACAGAAGTAG CTGGGAGTAC
  AACAATGTAC TTGGTAGCCC TTCAAGATTT CAAAGAACAC GTGTTGCTAA TGGCTTCTCT
  ACTCATCTGC CTTCACTCAC ACACAGACCT ATGGACAGAG CACATATTGA AGCTGAGTAC
  CCAACACCAT CGCCAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38114296	NES09267571	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28000371					SNP	A	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38114296	NES09267571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74068623 () rs orientation: forward

Symbol	Name	Function Class
Gm75169	predicted gene, 75169	within coordinates
Rr559293	regulatory region 559293	548 bp proximal
Rr559294	regulatory region 559294	1340 bp proximal