rs28004455 SNP Detail

Summary

• ID
  rs28004455
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:61079459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATAGAAC CCAGGACAAC
  CAGCTCAGAG ATGCTACCCC CACCCCCACA GTCATCTGGG CCTTTCACAC ATAAATTATT
  AATAAAAAAA ATGCACTACA GGCTTGTGGA TAGGACAATC TGGTGGGGGC ATTTTCTCAA
  CTGAGGTTCT CTCTTCCAGA ATGACCAAGA CTAGCTTGTG TCACAAAGCT ATTCCAAGCA
  S
  AGTTCAGAAA GGAACTTTAA ACTTCCTTCC TTCATGCTAA GACTCTATTA TCAGATAAAG
  ATCTATGTGA AATATATTAT TACAACGCAT TTGAAGTTTA ACTAAAATGC TGCCAAATAA
  AATTTTCTAC ATATGAAAAT GTTTATTTCA AAGGTTCATT TCTTTTTAAT AAAGAGGGTC
  AAAGATTATA AAAACTAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38158574	NES09323291	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28004455					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38158574	NES09323291	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:61079459 () rs orientation: forward

Symbol	Name	Function Class
Rr557773	regulatory region 557773	1876 bp distal