rs28004466 SNP Detail

Summary

• ID
  rs28004466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:61075219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCTTTG TGTGTATGTG
  GGGGGGGGGG GGGGCGCACA TAATAAGTAG CTGAGTGGCC ATATCCACCC AGGCACTTTT
  AACCTCTGTA AAGTTCACCT ACTTCTTAGC ACTCCTATAT ACCCACTGTA CAATATTAGT
  AACTGTAGAA GTCTATATTC ATGCTAGACT GTTCCCTCTG AGTAATGTTG TATCTTGTTG
  K
  CATTTAAGTG GACAGGGCCT GAAAAAGCCA TAGAAAGATA TATGTTCCAG CCAAAATGTT
  GACTTGTCAT TTGCTTTCCT GAGCCATGTT TTAGCCTCTG CATTCCATTC AAAGTGGAGT
  TTTATTAACA CAAAGCACAG TGGCTTTTTT CCCCCAACCA GCAGTCAAAT TCCTCTCCAT
  CTAAAGAATA TCTCTCTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38158585	NES09323572	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G		T	T	T
ss146653743	ENSMUSSNP4685482	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28004466					SNP	T	T	T	T	T	T	G	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38158585	NES09323572	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:61075219 () rs orientation: forward

Symbol	Name	Function Class
Rr557773	regulatory region 557773	1795 bp proximal