rs28004608 SNP Detail

Summary

• ID
  rs28004608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60595568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTCAAC CTCCTGAACT
  ATGACCTAAA TAAACTTCTT GTTTATAATG CCACTTCACT TTAGGTATTT TGATACAGTA
  ATGAAAAATG GACTGATATA GTATTGTAGG AGGTAATAAA AAACCTGCTA AGCATCTGAT
  GAGAATACCC TCTTGTTTAC CTTCGGATTC TAACTCTTCT ACCCCAGGCT TCCATAAATA
  R
  GGAATCCCAT GCAATGCAAA CTGAGCATGG TGGGGATGAG TGGGCCGAGG CCAACATTCT
  CCTAAGTAAC TCAACTATAC CACGTGACCA AGCAAAGCAA GGTGATACCT TGGGAAATTC
  TACCTTTCCA ATAATTGCAA GAGGTAAATG TACTGATGAG ATAGAGCAAC TGATCAGGAC
  GACTGTGTCA TAGTCACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38160427	NES09302274	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	A	A	G	A	G
ss45282596	mCV23062405	ABI	CRAMUS_MOUSE	f	SNP	A	G					G		G
ss146651655	ENSMUSSNP6516114	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28004608					SNP	A	G	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160427	NES09302274	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60595568 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	within coordinates
Rr49821	regulatory region 49821	833 bp proximal
Tssr24222	transcription start site region 24222	1931 bp upstream