rs28004616 SNP Detail

Summary

• ID
  rs28004616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60594008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGCCCT TTGAGTCTAT
  GGATGAAGAA CAGTGCAGGC TGATGTAATA GTTGTTGTCT CTAACTTGGA GAGCCAAAGG
  AAAGCCATCT CTAATCCCTC TGGCACCACA GCACTCTCTG CACTCTACAG TTCCATCACT
  GGGCAGTCGG CAAACAATCT CCAAAAGGAA GCTGGAACAT GGGTCCAGCT TCCCTGACGG
  Y
  GCTCTGCCCC TGGCAGAAAG TAAGCCCATG TCAGGCCAAT CACACCATGC TTCTGTTTAC
  AGCACCTACA GCTGTCTGTG AGTGTAGTGA CTATCTGTCT TTCCTCCCTG TCTGTTTTGT
  TATCACCATG TCTACAGTGT GTACAGTATG GTCACCTTGT AGGCATTTAT TATTGCTGGT
  TAAGTCAATA GATAAATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38160435	NES09302496	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28004616					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160435	NES09302496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60594008 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	within coordinates
Rr43986	regulatory region 43986	1008 bp distal
Rr64203	regulatory region 64203	461 bp distal
Tssr24222	transcription start site region 24222	371 bp upstream