rs28004625 SNP Detail

Summary

• ID
  rs28004625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60593375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAAAAA GCAAAAATGT
  AAAACTAAAT TCTCAATGAC AAATATACCA TTTATCTCGA TATTAAGGAC AGATTCCTGA
  ATACTATTAA TGTAAACCTA TTGGAAAAAG CTGTATCTAA AACTGAACCC GCTGTGCTCA
  AAACACGTTC CCAGTCATCC TTTTACTAAG CACAGTGCGG CTGGTTCCTG TCATCTACCT
  R
  CCCTCTTGGG GAATGGGCAC CCAGTGACTC CTGCACCTGA CAGCTGCCGT CAGCCCCTGA
  GGAAGCAGCA CCAGAAGGAA GGTTTAGTCT GGGCTGTTTC AGAAGTGTGG CAGCCCAGCC
  ACGGCACCCT TGCAGGGCCT TCCATGAGAG CGCTCAGGAT CACACACCCA CACTCAACTG
  TCAAGGAAGG CCTCAGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38160444	NES09302487	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28004625					SNP	G	A	A	A	A	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160444	NES09302487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60593375 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	within coordinates
Rr43986	regulatory region 43986	375 bp distal
Rr64203	regulatory region 64203	within coordinates
Tssr24221	transcription start site region 24221	1722 bp upstream
Tssr24222	transcription start site region 24222	249 bp downstream