rs28004628 SNP Detail

Summary

• ID
  rs28004628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60593068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACACCA CACGCTCAGA
  GGGCCCCATG TGGCTGACAC TGGACAGCAC AAGTCCAAGG TATTTTCTCC ACACATTCTG
  GGTTCCTTAT GACAACTTTA AACATAAAAA CTTATTGAAA TAAATACAAG GAAGAGGAAG
  CCCAATGTTG GATTAAAAAA AATTGAAGGT TTTTGTTTCT GTTTGTTTAA AGAAAGCTTC
  K
  AAAGACTGTT TGCCTATTTG TTTAAAAAGC AATGTGTGGA GGTGGGGAGG GAAAACCACG
  AGCAGAATAT ATCAGTATGG CACAACATTT TTTTCAATAA CAATAATAAC AAAAAAGCAA
  AAATGTAAAA CTAAATTCTC AATGACAAAT ATACCATTTA TCTCGATATT AAGGACAGAT
  TCCTGAATAC TATTAATGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38160447	NES09302484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28004628					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160447	NES09302484	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60593068 () rs orientation: forward

Symbol	Name	Function Class
Rbms1	RNA binding motif, single stranded interacting protein 1	within coordinates
Rr43986	regulatory region 43986	68 bp distal
Rr64203	regulatory region 64203	109 bp proximal
Tssr24221	transcription start site region 24221	1415 bp upstream
Tssr24222	transcription start site region 24222	556 bp downstream