rs28004638 SNP Detail

Summary

• ID
  rs28004638
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60591791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAACCC GAGGCTTGTT
  GCTATCAAAC AACATAGATC AGATGCTGTA GTCCCCTAAC CCCTGATGTC AGGACTACAA
  CATCTAATTC AGTTTTAAAA ACAAGAATAC CCCAGAGTTT AGTCACACAA GACCCCAGCA
  GTCAACAGAA GAGAACTCTC TTGCAGGTCA GTAACTGAAC TCAGTGACAG TGCTAACGTC
  W
  GTGCCCAGGC CATATAGAGC TGTGCGGAAG ACTCTGCTAC AGGAAGAGAA AGGCGCACCG
  GCCCTGCTAG CCCTGTAATA CTATCAGATC AGTGCTGGAC AAGGAGCTTA ATGAGGGGTC
  ACTCCAGGCT GAAGGTAAAG CCTTCTCACA AAGTAATTGA AGAGGAGTTA ATGACCTCTT
  GCTTCTTGAT CAGGGAAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38160457	NES09302474	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28004638					SNP	A	A	A	A	A	A	T	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160457	NES09302474	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60591791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Tssr24221	transcription start site region 24221			138 bp upstream
Tssr24222	transcription start site region 24222			1833 bp downstream