rs28004746 SNP Detail

Summary

• ID
  rs28004746
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60554982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTGCTT CACAATATTA
  CCAACAAAGC AAACCACTAG ATTTGGCTTT CATATGAAGA TACTGCTGCT ACTTCTGAGG
  GAGTTAAAAG ACCACGTGTG CATGTGTTCT GCTCATTTTG TAGGTTTCTT TTCACTTTTG
  CTAACTAATG AATGCTCTTT ATTTGTTGCA GCCACCTTTT TGTCTAGACT TCAATGTTCC
  K
  TGCAGATGGG ATGAACTTTC CCATCTGAAT ATGGCCATCT CTTCTCAGTG TACCAACTCC
  ATCCGTAGTC ATTCCTGCAT CCCCAGTATC CCTACCTCCA GCTCAGTTGA CAGAAACATA
  GACATAGGCT CTCCTACCAG GACACAGGTC ACTGCTGCTC AGCATTCTTG AGGCTTAAGT
  AACAGGAACC ATGCTGTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38160566	NES09303678	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28004746					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160566	NES09303678	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60554982 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	1995 bp upstream
Rr557688	regulatory region 557688	1505 bp distal
Tssr24213	transcription start site region 24213	1981 bp upstream
Tssr24214	transcription start site region 24214	1967 bp upstream