rs28004748 SNP Detail

Summary

• ID
  rs28004748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60553981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGAGAA GTCAGTTGAG
  CTGTCCAGAG CTACACAGCC CCTGAGATTC AGGATTTAAA ATTTCTGGCT CCAAAGCCCT
  TTGAGTCATG CTACATTGCT GCTTGAACAC GCAGTGGGCA TACTGATACG GTTTAGCAGC
  TTGCAACTGC TGTAGGGTTT GAGGAATGTT GGAGCAAGAA CAGAGAAAGC TGAGAGACCC
  R
  GGTTTGAATC CAGACTCCAC TGGCTGTGGG ATTTTAGAAA AACTGCTAGC ATCTGAGCTT
  ATCCATCAGA AGTGTGTGTG TGGGGGGGGG GGGGGAGGGG GTGGAGGTGG GGGTAGGAGG
  GTAGGGTATA AGTGTGATGA AACTTCCAAA CCACCTTTCA TATCTCTCTT GATTCCAGGA
  GCCTTCCTTA ATGGGCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38160568	NES09303750	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	A	A	A	A	A	A
ss45207513	mCV23749998	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						A
ss146651391	ENSMUSSNP6519522	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28004748					SNP	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160568	NES09303750	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60553981 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	994 bp upstream
Rr557687	regulatory region 557687	1005 bp distal
Rr557688	regulatory region 557688	504 bp distal
Tssr24212	transcription start site region 24212	1095 bp upstream
Tssr24213	transcription start site region 24213	980 bp upstream
Tssr24214	transcription start site region 24214	966 bp upstream