rs28004749 SNP Detail

Summary

• ID
  rs28004749
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60553159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTACACC GCTAGGCAAA
  GATACTGCTG CTGAGTGACA GAGCGCCTGG CTGATTTACA CAAACCCCCA AGCGCGCGCA
  AGCGCGCGGA TGAGAATAGG TTAGCTTTAG ATTGACGAGC AAATGTGGAG CCAGACTTCT
  GGCTGACAAA TGGCAGAGCT ATGCCAGCGC ATTCGCTCCT CTGGAGGGAG ACCAAAAGTG
  W
  AACAGGATCA AGTTCACTCT GAAAGGACAT CCAAACCTAG TGGATGGCTG GGTTGGTAAA
  ATATATATAG ACACGAACCC CCCAAAATAG AATTTCGAGA GTTCATAGTT GAGCACATAC
  CCAGGCCAGT GACAATACTT GCAGAGAATC CCTGGACCCT GTGTGTATTT ATATTGACAT
  TCCTTCAGAA GGGCCCTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss38160569	NES09303831	PERLEGEN	MM_PANEL2	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs28004749					SNP	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160569	NES09303831	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60553159 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	172 bp upstream
Rr557685	regulatory region 557685	1479 bp distal
Rr557686	regulatory region 557686	1686 bp distal
Rr557687	regulatory region 557687	183 bp distal
Rr557688	regulatory region 557688	within coordinates
Tssr24212	transcription start site region 24212	273 bp upstream
Tssr24213	transcription start site region 24213	158 bp upstream
Tssr24214	transcription start site region 24214	144 bp upstream