rs28004750 SNP Detail

Summary

• ID
  rs28004750
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60553063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTAAAA CATTCTGTTG
  TCACCATCCC TGAAAAAGCA CATTCATGGG ACTATTTCTT CCACCGGCAT AATGAGGCAT
  TTCATAAAGG CATGTGGGTG TACACCGCTA GGCAAAGATA CTGCTGCTGA GTGACAGAGC
  GCCTGGCTGA TTTACACAAA CCCCCAAGCG CGCGCAAGCG CGCGGATGAG AATAGGTTAG
  S
  TTTAGATTGA CGAGCAAATG TGGAGCCAGA CTTCTGGCTG ACAAATGGCA GAGCTATGCC
  AGCGCATTCG CTCCTCTGGA GGGAGACCAA AAGTGAAACA GGATCAAGTT CACTCTGAAA
  GGACATCCAA ACCTAGTGGA TGGCTGGGTT GGTAAAATAT ATATAGACAC GAACCCCCCA
  AAATAGAATT TCGAGAGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss38160570	NES09303828	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs28004750					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160570	NES09303828	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60553063 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	76 bp upstream
Tssr24212	transcription start site region 24212	177 bp upstream
Tssr24213	transcription start site region 24213	62 bp upstream
Tssr24214	transcription start site region 24214	48 bp upstream