rs28004751 SNP Detail

Summary

• ID
  rs28004751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60552977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATCTCAG AAAGTGCTGA
  CATGCGTTAC TGTACCCGTG AGCAAAGTCT TTGGCAGAAG TGCCATTGAT CCTTGTGGTA
  GTGAATAGAC TTAAAACATT CTGTTGTCAC CATCCCTGAA AAAGCACATT CATGGGACTA
  TTTCTTCCAC CGGCATAATG AGGCATTTCA TAAAGGCATG TGGGTGTACA CCGCTAGGCA
  R
  AGATACTGCT GCTGAGTGAC AGAGCGCCTG GCTGATTTAC ACAAACCCCC AAGCGCGCGC
  AAGCGCGCGG ATGAGAATAG GTTAGCTTTA GATTGACGAG CAAATGTGGA GCCAGACTTC
  TGGCTGACAA ATGGCAGAGC TATGCCAGCG CATTCGCTCC TCTGGAGGGA GACCAAAAGT
  GAAACAGGAT CAAGTTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss38160571	NES09303826	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs28004751					SNP	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160571	NES09303826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60552977 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr557685	regulatory region 557685	1297 bp distal
Rr557686	regulatory region 557686	1504 bp distal
Rr557687	regulatory region 557687	1 bp distal
Rr557688	regulatory region 557688	within coordinates
Tssr24212	transcription start site region 24212	91 bp upstream
Tssr24213	transcription start site region 24213	3 bp downstream
Tssr24214	transcription start site region 24214	37 bp downstream