rs28004752 SNP Detail

Summary

• ID
  rs28004752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60552928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGCCAT GCAGAAAACT
  TGGTCCACTT ACCTCGCACG GGAGACCCTC TAATCTCAGA AAGTGCTGAC ATGCGTTACT
  GTACCCGTGA GCAAAGTCTT TGGCAGAAGT GCCATTGATC CTTGTGGTAG TGAATAGACT
  TAAAACATTC TGTTGTCACC ATCCCTGAAA AAGCACATTC ATGGGACTAT TTCTTCCACC
  R
  GCATAATGAG GCATTTCATA AAGGCATGTG GGTGTACACC GCTAGGCAAA GATACTGCTG
  CTGAGTGACA GAGCGCCTGG CTGATTTACA CAAACCCCCA AGCGCGCGCA AGCGCGCGGA
  TGAGAATAGG TTAGCTTTAG ATTGACGAGC AAATGTGGAG CCAGACTTCT GGCTGACAAA
  TGGCAGAGCT ATGCCAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss38160572	NES09303824	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs28004752					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160572	NES09303824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60552928 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Tssr24212	transcription start site region 24212	42 bp upstream
Tssr24213	transcription start site region 24213	52 bp downstream
Tssr24214	transcription start site region 24214	86 bp downstream