rs28004754 SNP Detail

Summary

• ID
  rs28004754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTTGAG GGCCAATACA
  ATATAGTTAT GTCTGCGAGT CCTTAATTTT AGGGGGTACA TTTCTTAGAT GAATAACCTT
  TCACAGATAT TGAATTTTTT AAAAATGCAG TATTGGTCTT ACTTAGAGTT CTCACAGTGA
  ATGGTAATGA CATTAGGCTT TCCACTCACA GAAATAAAAC ATGCTCTCTG TAGAAGCTAG
  R
  AGTGACAGTC TTCCCATCTC CTCTTCCCCC ATGATTTTCC TGTATTATCT GGACATTAAA
  ATACCACTGT ATAACCAGGA GACACTAAAG TTAACTGGTC ACATTGGCAT GTCAATACAA
  ACATATATAT ATATATATAT ATATATATAT ATATATATAT ATATACACAC ATACATATAT
  ACACACATAC ATACATACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss38160574	NES09303964	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs28004754					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160574	NES09303964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551907 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr557685	regulatory region 557685	227 bp distal
Rr557686	regulatory region 557686	434 bp distal
Rr557687	regulatory region 557687	801 bp proximal
Rr557688	regulatory region 557688	1070 bp proximal
Tssr24212	transcription start site region 24212	968 bp downstream
Tssr24213	transcription start site region 24213	1073 bp downstream
Tssr24214	transcription start site region 24214	1107 bp downstream