rs28004755 SNP Detail

Summary

• ID
  rs28004755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGAAG CTAGGATTTG
  TATTTCACTA TGACACACAC AATTTTACTT AAGCAGACGC TAATGCTTGT AGTGTGACCA
  AGTGACTTCA TGGTTGGAAT TCAGTATTAA ATTCCTATGA TCTGCTGTAG CTGTCCAAAA
  TCCACAACAG TGAGGAAAAA GCTATTGCTC TCTAAACAGA ATCTATATCC TGCCCATTTT
  R
  GACACTTTGA GGGCCAATAC AATATAGTTA TGTCTGCGAG TCCTTAATTT TAGGGGGTAC
  ATTTCTTAGA TGAATAACCT TTCACAGATA TTGAATTTTT TAAAAATGCA GTATTGGTCT
  TACTTAGAGT TCTCACAGTG AATGGTAATG ACATTAGGCT TTCCACTCAC AGAAATAAAA
  CATGCTCTCT GTAGAAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss38160575	NES09303963	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs28004755					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160575	NES09303963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551705 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Tssr24212	transcription start site region 24212	1170 bp downstream
Tssr24213	transcription start site region 24213	1275 bp downstream
Tssr24214	transcription start site region 24214	1309 bp downstream