rs28004756 SNP Detail

Summary

• ID
  rs28004756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGCACA TCTAGCTGTA
  AGTTTGCTTT AACGTATGGT GTCTGGGGAA AATACTGAGA CATCGCAAAA ATATCATTAT
  ATTTCAAATT TAAACTTTTG AGACTGCACT TCATGCTGCG AACACTAGAG GGCAGAAGTC
  AGAGAGAAAA GGCTACCCTG GAAGGAACTG CTCTGGGAAG CTAGGATTTG TATTTCACTA
  Y
  GACACACACA ATTTTACTTA AGCAGACGCT AATGCTTGTA GTGTGACCAA GTGACTTCAT
  GGTTGGAATT CAGTATTAAA TTCCTATGAT CTGCTGTAGC TGTCCAAAAT CCACAACAGT
  GAGGAAAAAG CTATTGCTCT CTAAACAGAA TCTATATCCT GCCCATTTTA GACACTTTGA
  GGGCCAATAC AATATAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms
ss38160576	NES09303962	PERLEGEN	MM_PANEL2	f	SNP		T		C
ss146651380	ENSMUSSNP5537633	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms
rs28004756					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160576	NES09303962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551535 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr557685	regulatory region 557685	within coordinates
Rr557686	regulatory region 557686	62 bp distal
Rr557687	regulatory region 557687	1173 bp proximal
Rr557688	regulatory region 557688	1442 bp proximal
Tssr24212	transcription start site region 24212	1340 bp downstream
Tssr24213	transcription start site region 24213	1445 bp downstream
Tssr24214	transcription start site region 24214	1479 bp downstream