rs28004758 SNP Detail

Summary

• ID
  rs28004758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60551186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGTGAC TGTCAACATG
  CACCAGCTTT CTGGAAGAAC TTTAAGAAAT CAGTCACTTT TTTTCTAGAG TCAAATTTAA
  AAACCTTGAA CCTCTTACGT AATCAAAATG TATGCCCCCC CCCCCCACCT CTTGGGGAAC
  GTGTTATAGT AATTCCTGAT TGCATGCCTT AGTTATTAGC ATTATTTACC TTTCTGCATA
  Y
  CACAGTAGAA GCAAATTCAG ATGCAAGGAT TCAAAGCAGA AGAGGGGTTT AACCCTTAAG
  AACTAGACAC AAAGTCAATG GCTCTTTAGG AGCCTGAAGA TGGGTTTGAA ACCTCAGATG
  AAAAATCCCT GACATCACAC GATGCCCCAG TCAGCACATC TAGCTGTAAG TTTGCTTTAA
  CGTATGGTGT CTGGGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	MSM/Ms
ss38160578	NES09303960	PERLEGEN	MM_PANEL2	f	SNP			C	C		T
ss146651367	ENSMUSSNP5982049	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	MSM/Ms
rs28004758					SNP	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38160578	NES09303960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60551186 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	within coordinates
Rr557685	regulatory region 557685	within coordinates
Rr557686	regulatory region 557686	266 bp proximal
Rr557687	regulatory region 557687	1522 bp proximal
Rr557688	regulatory region 557688	1791 bp proximal
Tssr24212	transcription start site region 24212	1689 bp downstream
Tssr24213	transcription start site region 24213	1794 bp downstream
Tssr24214	transcription start site region 24214	1828 bp downstream