rs28006809 SNP Detail

Summary

• ID
  rs28006809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62315966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCATAAA TATAGCACCA
  GAGTCTTGGT AAAACTTTCT CTCAGTGGTT CTTCTCTTTT TTCTCCTCCT TACTTGCCTT
  CTGTTATTTT AGAAGTAACT CACCCCCCTT TTGTCAGAAA ATAGTTCTAT AACTCTCCCT
  CCACCCAACT AATTCTGGCT CTTAGAGAAA AGGGCACCAA GGATATAAGC CTTATAATAA
  Y
  CCCTAGGAGG AACAAATAAG CTTCTTAATA GACATTGTGT TAAGAGACAA TATGGGTGCT
  AAGATAAGCT TTAAATTCAG TTTGAGTGTA TAGATTCAAT AGTAACTTTA GCACCAGCCT
  CTTCTTGGCC TTCATTTCCC ATCAATGCAG TTGTTTAATT ATTTATGTGT GAGGCAGGGG
  TAGTGGTAGG CATGTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155531	NES09308750	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006809					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155531	NES09308750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62315966 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	1972 bp upstream
Rr366692	regulatory region 366692	524 bp downstream
Rr557879	regulatory region 557879	336 bp distal
Tssr24273	transcription start site region 24273	1969 bp upstream