rs28006811 SNP Detail

Summary

• ID
  rs28006811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62315676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTCCAA GTCTAGCAGA
  ACTAACTCAA TTGCACTGAT TAAGCTTAGA AGTGTGGACC AGCTTAGCGC AGGACTAGAT
  TGCTCTTTAT GATTGCGAGT GTCAGGAGTG TAACAGCCAC ACCTTTATTA AATGTTTTGT
  CACCTTCCGG CCCCTTTTAT CCTGTCTCCA CTTTCCTCTC CTTTTCTCAT CTCCCATTTT
  Y
  CACCCTCCTC TCTTTTCCCT TTTCTGATAC TACCAGTGTG TGAAGCATCC CTAAGAGAGG
  GTTCTGCAGA TGATGTTTAA GATGCTCAAA AGCCATAAAT ATAGCACCAG AGTCTTGGTA
  AAACTTTCTC TCAGTGGTTC TTCTCTTTTT TCTCCTCCTT ACTTGCCTTC TGTTATTTTA
  GAAGTAACTC ACCCCCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155533	NES09308748	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006811					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155533	NES09308748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62315676 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	1682 bp upstream
Rr366692	regulatory region 366692	234 bp downstream
Rr557879	regulatory region 557879	46 bp distal
Tssr24273	transcription start site region 24273	1679 bp upstream