rs28006812 SNP Detail

Summary

• ID
  rs28006812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62315512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACATTTT ATCAAGGCTC
  CCAGGAAATC TATTAGCAGG TTAAGCTGAA ATCACAGCTG TATAAATTAT CAAGTTCACT
  TTCTCATTGG TGCTGCTGGT GTCTTGAGCC AAGGACAGCT CTTGGCAGAG CCAGCAGATG
  GGGTGAAAGA GCAGAGAAAG GTGTCCAGCT CCAAGTCTAG CAGAACTAAC TCAATTGCAC
  Y
  GATTAAGCTT AGAAGTGTGG ACCAGCTTAG CGCAGGACTA GATTGCTCTT TATGATTGCG
  AGTGTCAGGA GTGTAACAGC CACACCTTTA TTAAATGTTT TGTCACCTTC CGGCCCCTTT
  TATCCTGTCT CCACTTTCCT CTCCTTTTCT CATCTCCCAT TTTTCACCCT CCTCTCTTTT
  CCCTTTTCTG ATACTACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155534	NES09308747	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006812					SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155534	NES09308747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62315512 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	1518 bp upstream
Rr366692	regulatory region 366692	70 bp downstream
Rr557879	regulatory region 557879	97 bp proximal
Tssr24273	transcription start site region 24273	1515 bp upstream