rs28006816 SNP Detail

Summary

• ID
  rs28006816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62315064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCCTGC TATCATCTGT
  AAGCTAGGGG ACTTTGGCCA AGCCACACAT TCTCCGGGAT TCTAATGCTG ATTTGTGAGG
  AGAGCAGTGG TTAAGCATTT GTTTAATATA TGACAAGACC ACAGCGTTTC CCACCTAAAT
  CTGGATGTCC AAATGTATCA ACTACCTGGT ATAACTGATA ACTTCCATGG AAATAGACCA
  Y
  TGAAACAACT GGAGGAGTAC TCTGACTGAA CTTAATTCTT CATTCTGTGC ATTAAACTCA
  CTGGTGGGTG TGGAGCTACA CTAAGAAATA GGTACCATTT TCCACGTCAG TAGAGAGAAC
  TTACTGAGGG GTTTTGTGCT AGTTGTCATT GATGATATGA AGCCCTGGTC CCTAGAGTTA
  GGTCCAAGGA CCAGCATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155538	NES09308803	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006816					SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155538	NES09308803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62315064 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	1070 bp upstream
Rr366692	regulatory region 366692	within coordinates
Tssr24273	transcription start site region 24273	1067 bp upstream