rs28006818 SNP Detail

Summary

• ID
  rs28006818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62314719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGACAC AGAAGGCAAA
  ATGAGAATAC ACAAACTCAC TGATGCTGAT AGCAAAGGGT CTATTATTTC TGTTTTCATC
  TTAAAATGAA ATAAAAATGA CTTAAATTTA ATTTTACTGA GAAGGGGTGG GGCATTAGAA
  TACAAAGAGA GATACAGGAG GCAAACTATT GAGATGAGAT GCATGCTGTT TCTTTCTATA
  R
  CTTCCAGCGT GTATATAGGT CCTTACTAAT TATAGCATAT AGCAGATACA ATTCTAGCCA
  TTCCAACAGA AGGAAATATA AGATGGGAAA TAACCAGGAT GTATGAACAG ACAGCATGAA
  ACTCCAGTGA TCATAAGTAT GTTTCCTTCC CTGCTATCAT CTGTAAGCTA GGGGACTTTG
  GCCAAGCCAC ACATTCTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38155540	NES09308801	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28006818					SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155540	NES09308801	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62314719 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	725 bp upstream
Rr366692	regulatory region 366692	within coordinates
Tssr24273	transcription start site region 24273	722 bp upstream